Lib.rs

› Science › Biology › Exon
#bioinformatics #sam #exon #data #object-storage #file #sql

exon-sam

Exon SAM

by Trent Hauck and 2 contributors

58 releases (27 breaking)

0.32.4 Dec 21, 2024
0.32.2 Sep 4, 2024
0.29.1 Jul 16, 2024
0.15.0 Mar 27, 2024
0.5.5 Dec 18, 2023

#7 in #exon

Download history 23/week @ 2024-10-02 9/week @ 2024-10-09 2/week @ 2024-10-16 2/week @ 2024-10-23 13/week @ 2024-10-30 3/week @ 2024-11-06 6/week @ 2024-11-13 19/week @ 2024-11-20 4/week @ 2024-11-27 56/week @ 2024-12-04 266/week @ 2024-12-11 224/week @ 2024-12-18 24/week @ 2024-12-25 8/week @ 2025-01-08 28/week @ 2025-01-15

61 downloads per month
Used in 4 crates (3 directly)

Apache-2.0

80KB
1.5K SLoC

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~76MB
~1.5M SLoC