Lib.rs

› Parser implementations | Science › Biology › Exon
#bioinformatics #vcf #exon #data #arrow #proteomics #primitive

exon-vcf

Exon VCF

by Trent Hauck and 2 contributors

55 releases (27 breaking)

0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024
0.15.0 Mar 27, 2024
0.5.5 Dec 18, 2023

#321 in Biology

Download history 28/week @ 2024-07-01 26/week @ 2024-07-08 762/week @ 2024-07-15 120/week @ 2024-07-22 308/week @ 2024-07-29 60/week @ 2024-08-05 217/week @ 2024-08-12 40/week @ 2024-08-19 52/week @ 2024-08-26 491/week @ 2024-09-02 3/week @ 2024-09-09 137/week @ 2024-09-16 96/week @ 2024-09-23 30/week @ 2024-09-30 10/week @ 2024-10-07 3/week @ 2024-10-14

142 downloads per month
Used in 4 crates (2 directly)

Apache-2.0

79KB
1.5K SLoC

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~72MB
~1.5M SLoC