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#bioinformatics #bcf #exon #data #file #format #object

exon-bcf

Exon BCF

by Trent Hauck and 2 contributors

57 releases (27 breaking)

0.32.4 Dec 21, 2024
0.32.2 Sep 4, 2024
0.29.1 Jul 16, 2024
0.15.0 Mar 27, 2024
0.5.5 Dec 18, 2023

#3 in #bcf

Download history 83/week @ 2024-09-11 63/week @ 2024-09-18 47/week @ 2024-09-25 15/week @ 2024-10-02 3/week @ 2024-10-09 9/week @ 2024-10-30 1/week @ 2024-11-06 5/week @ 2024-11-13 14/week @ 2024-11-20 48/week @ 2024-12-04 243/week @ 2024-12-11 216/week @ 2024-12-18 22/week @ 2024-12-25

529 downloads per month
Used in 3 crates (via exon)

Apache-2.0

90KB
1.5K SLoC

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~75MB
~1.5M SLoC