Lib.rs

› Science › Biology | Parser implementations › Exon
#object-storage #bioinformatics #file-format #execution-engine #exon #proteomics #arrow

exon-common

Common utilities for Exon

by Trent Hauck and 2 contributors

78 releases (29 breaking)

0.32.4 Dec 21, 2024
0.32.2 Sep 4, 2024
0.29.1 Jul 16, 2024
0.15.0 Mar 27, 2024
0.5.3 Nov 29, 2023

#109 in Biology

Download history 138/week @ 2024-09-18 128/week @ 2024-09-25 50/week @ 2024-10-02 33/week @ 2024-10-09 23/week @ 2024-10-16 25/week @ 2024-10-23 46/week @ 2024-10-30 17/week @ 2024-11-06 12/week @ 2024-11-13 54/week @ 2024-11-20 60/week @ 2024-11-27 107/week @ 2024-12-04 330/week @ 2024-12-11 283/week @ 2024-12-18 24/week @ 2024-12-25 25/week @ 2025-01-01

738 downloads per month
Used in 19 crates (16 directly)

Apache-2.0

11KB
125 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

lib.rs:

Common utilities for Exon.

Dependencies

~68MB
~1.5M SLoC