Lib.rs

› Science › Biology | Parser implementations › Exon
#object-storage #bioinformatics #file-format #execution-engine #exon #proteomics #arrow

exon-common

Common utilities for Exon

by Trent Hauck and 2 contributors

76 releases (29 breaking)

0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.29.1 Jul 16, 2024
0.15.0 Mar 27, 2024
0.5.3 Nov 29, 2023

#290 in Biology

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128 downloads per month
Used in 19 crates (16 directly)

Apache-2.0

11KB
125 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

lib.rs:

Common utilities for Exon.

Dependencies

~67MB
~1.5M SLoC