20 releases (7 breaking)

0.9.2 Feb 6, 2025
0.8.0 Jan 26, 2025
0.6.6 Dec 18, 2024
0.6.0 Nov 29, 2024

#7 in #aligned

Download history 755/week @ 2024-11-20 369/week @ 2024-11-27 419/week @ 2024-12-04 60/week @ 2024-12-11 110/week @ 2024-12-18 77/week @ 2024-12-25 26/week @ 2025-01-01 83/week @ 2025-01-08 336/week @ 2025-01-22 38/week @ 2025-01-29 448/week @ 2025-02-05

834 downloads per month
Used in 2 crates

MIT license

57KB
1K SLoC

Rust 873 SLoC // 0.0% comments Python 147 SLoC // 0.2% comments
# sbr2smc.aligned.bam and it's corresponding .bam file will be generated
asts -q subreads.bam -t smc.bam -p sbr2smc.aligned

chagelog

0.9.2

  • Don't execute fallback alignment when the first stage alignment get enough aligned result.

0.9.1

  • reporter bug fix

0.9.0

  • reporter
  • gsmm2(0.20 -> 0.22)
  • identity_gap_compressed instead of identity_without_long_indel(10)

0.8.0

  • using hpc
  • default kmer/wins and fallback kmer/wins

0.7.1

  • length filter when add sbr to SubreadsAndSmc
  • log file

0.4.0

  • dw,cr,ar and qual from sbr.bam will dump the result bam
  • worked for smc reads that length < 200 && >200

0.3.0

  • add ch tag to bam record

0.2.1

  • worked

0.1.1

0.1.0

Dependencies

~34–46MB
~753K SLoC