24 releases (9 breaking)
new 0.12.3 | Mar 21, 2025 |
---|---|
0.10.0 | Feb 28, 2025 |
0.6.6 | Dec 18, 2024 |
0.6.0 | Nov 29, 2024 |
#127 in Biology
316 downloads per month
Used in 2 crates
100KB
2K
SLoC
# sbr2smc.aligned.bam and it's corresponding .bam file will be generated
asts -q subreads.bam -t smc.bam -p sbr2smc.aligned
chagelog
0.9.2
- Don't execute fallback alignment when the first stage alignment get enough aligned result.
0.9.1
- reporter bug fix
0.9.0
- reporter
- gsmm2(0.20 -> 0.22)
- identity_gap_compressed instead of identity_without_long_indel(10)
0.8.0
- using hpc
- default kmer/wins and fallback kmer/wins
0.7.1
- length filter when add sbr to SubreadsAndSmc
- log file
0.4.0
- dw,cr,ar and qual from sbr.bam will dump the result bam
- worked for smc reads that length < 200 && >200
0.3.0
- add ch tag to bam record
0.2.1
- worked
0.1.1
0.1.0
Dependencies
~34–47MB
~781K SLoC