#site #estimation #data #frequency #spectrum #algorithm #expectation-maximisation

winsfs-core

Site frequency spectrum estimation based on window expectation-maximisation algorithm

1 unstable release

0.1.0 Nov 1, 2022

#2424 in Algorithms

23 downloads per month
Used in winsfs-cli

MIT license

205KB
4.5K SLoC

Methods for inferring the site frequency spectrum from low-quality data using various forms of the expectation-maximisation algorithm. The types required for common usage.

Dependencies

~5.5MB
~96K SLoC