#sequence-alignment #biological #model #markov #hidden #profile #phmm

libnail

Libnail is a library that performs profile Hidden Markov Model (PHMM) biological sequence alignment

3 releases (breaking)

0.3.0 Dec 24, 2024
0.2.0 Jul 12, 2024
0.1.0 Jan 28, 2024

#118 in Biology

Download history 31/week @ 2024-09-21 5/week @ 2024-09-28 3/week @ 2024-10-12 15/week @ 2024-12-07 1/week @ 2024-12-14 159/week @ 2024-12-21 10/week @ 2024-12-28 1/week @ 2025-01-04

172 downloads per month
Used in nail

BSD-3-Clause

310KB
6.5K SLoC

libnail

About

libnail is a library that performs profile Hidden Markov Model (PHMM) biological sequence alignment.

This libary is in early stages of development. The API should be considered highly unstable, and documentation is lacking.

Installation

To build libnail from source, you'll first need to install Rust and Cargo. The easiest way to do that is to use rustup.

Once that's done, you can then build nail:

git clone https://github.com/TravisWheelerLab/nail
cd nail/
cargo build --release

License

libnail is licensed under the BSD-3-Clause license.

See LICENSE for details.

Authors

Jack Roddy - jroddy@arizona.edu

Dependencies

~4–6.5MB
~117K SLoC