#health #hl7 #parser

hl7-parser

Parses the structure of HL7v2 messages, but does not validate the correctness of the messages

2 unstable releases

0.2.0 Jan 13, 2024
0.1.0 Jan 12, 2024

#942 in Parser implementations

Apache-2.0

135KB
2.5K SLoC

hl7-parser   Build Status Latest Version Docs License

Parses the structure of HL7v2 messages, but does not validate the correctness of the messages.

[!WARNING]
Although a best effort has been made to make this parse HL7v2 messages correctly, there are no guarantees that it is actually correct. Use at your own risk.

Features

  • Parse HL7v2 messages into a structure that can be queried
  • Parse HL7v2 timestamps into chrono or time types
  • Decode HL7v2 encoded strings
  • Locate a cursor within a message based on a character index
  • Optional lenient parsing of segment separators (allow \r\n, \n, and \r to count as segment separators instead of just \r)
  • Non-ASCII/UTF-8 encodings

(Unchecked features are not yet implemented, but planned for future releases).

Usage

Add this to your Cargo.toml:

[dependencies]
hl7-parser = "0.2"

and then you can parse HL7v2 messages:

use hl7_parser::ParsedMessage;

let message = include_str!("../test_assets/sample_adt_a01.hl7");
let message = ParsedMessage::parse(&message, true).expect("can parse message");

let trigger_event = message.query_value("MSH.9.2").expect("can parse location query");
assert_eq!(trigger_event, Some("A01"));

Optional Cargo Features

By default, no optional features are enabled.

  • serde: enable serde support for all data structures
  • time: enable time support for parsing timestamps
  • chrono: enable chrono support for parsing timestamps

Examples

Parsing a ParsedMessage

use hl7_parser::ParsedMessage;
use std::num::NonZeroUsize;

let message = r#"
MSH|^~\&|AccMgr|1|||20050110045504||ADT^A01|599102|P|2.3|||
PID|1||10006579^^^1^MRN^1||DUCK^DONALD^D||19241010|M||1|111 DUCK ST^^FOWL^CA^999990000^^M|1|8885551212|8885551212|1|2||40007716^^^AccMgr^VN^1|123121234|||||||||||NO NK1|1|DUCK^HUEY|SO|3583 DUCK RD^^FOWL^CA^999990000|8885552222||Y||||||||||||||
PV1|1|I|PREOP^101^1^1^^^S|3|||37^DISNEY^WALT^^^^^^AccMgr^^^^CI|||01||||1|||37^DISNEY^WALT^^^^^^AccMgr^^^^CI|2|40007716^^^AccMgr^VN|4|||||||||||||||||||1||G|||20050110045253||||||
"#;

let message = ParsedMessage::parse(message.trim(), true).expect("can parse message");
let message_type = message.get_field_source(("MSH", 0), NonZeroUsize::new(9).unwrap());
assert_eq!(message_type.unwrap(), "ADT^A01");

Querying a ParsedMessage

use hl7_parser::ParsedMessage;

let message = include_str!("../test_assets/sample_adt_a01.hl7");
let message = ParsedMessage::parse(&message, true).expect("can parse message");

let trigger_event = message.query_value("MSH.9.2").expect("can parse location query");
assert_eq!(trigger_event, Some("A01"));

Locating the Cursor Within A ParsedMessage

(The cursor being the character index of some point within the buffer)

use hl7_parser::ParsedMessage;
use std::num::NonZeroUsize;

let message = r#"
MSH|^~\&|AccMgr|1|||20050110045504||ADT^A01|599102|P|2.3|||
PID|1||10006579^^^1^MRN^1||DUCK^DONALD^D||19241010|M||1|111 DUCK ST^^FOWL^CA^999990000^^M|1|8885551212|8885551212|1|2||40007716^^^AccMgr^VN^1|123121234|||||||||||NO NK1|1|DUCK^HUEY|SO|3583 DUCK RD^^FOWL^CA^999990000|8885552222||Y||||||||||||||
PV1|1|I|PREOP^101^1^1^^^S|3|||37^DISNEY^WALT^^^^^^AccMgr^^^^CI|||01||||1|||37^DISNEY^WALT^^^^^^AccMgr^^^^CI|2|40007716^^^AccMgr^VN|4|||||||||||||||||||1||G|||20050110045253||||||
"#;

let message = ParsedMessage::parse(message.trim(), true).expect("can parse message");
let location = message.locate_cursor(25);
assert_eq!(location.segment.unwrap().0, "MSH");
assert_eq!(location.field.unwrap().0.get(), 7);
assert_eq!(location.field.unwrap().1.source(message.source), "20050110045504");

Parsing ParsedMessage Timestamps

Using the time crate

#[cfg(feature = "time")]
use hl7_parser::parse_timestamp_time;

let ts = "20230312195905-0700";
let ts = parse_timestamp_time(ts).expect("can parse timestamp");

assert_eq!(ts.year(), 2023);
assert_eq!(ts.month(), time::Month::March);
assert_eq!(ts.day(), 12);
assert_eq!(ts.hour(), 19);
assert_eq!(ts.minute(), 59);
assert_eq!(ts.second(), 05);
assert_eq!(ts.microsecond(), 0);
assert_eq!(ts.offset().whole_hours(), -7);
assert_eq!(ts.offset().minutes_past_hour(), 0);

Using the chrono crate

#[cfg(feature = "chrono")]
use hl7_parser::parse_timestamp_chrono;
use chrono::prelude::*;

let ts = "20230312195905-0700";
let ts = parse_timestamp_chrono(ts).expect("can parse timestamp");

assert_eq!(ts.year(), 2023);
assert_eq!(ts.month(), 3);
assert_eq!(ts.day(), 12);
assert_eq!(ts.hour(), 19);
assert_eq!(ts.minute(), 59);
assert_eq!(ts.second(), 05);
assert_eq!(ts.nanosecond(), 123_400_000);
assert_eq!(ts.offset().local_minus_utc() / 3600, -7);
assert_eq!(ts.offset().local_minus_utc() % 3600, 0);

Decoding Encoded Strings

use hl7_parser::Separators;

let separators = Separators::default();
assert_eq!(
    separators.decode(r#"Pierre DuRho\S\ne \T\ Cie"#).as_str(),
    r#"Pierre DuRho^ne & Cie"#
);

Dependencies

~2–3.5MB
~64K SLoC