#k-mer #sequence #verify #set #genomics #content #fasta

app verify-same-kmer-content

Verify that an SPSS has the same kmer content as a set of unitigs

10 stable releases

1.4.1 Dec 12, 2024
1.3.1 Oct 27, 2023
1.1.1 Jan 24, 2023
1.0.2 Aug 16, 2022

#25 in Biology

Download history 16/week @ 2024-09-20 12/week @ 2024-09-27 1/week @ 2024-10-04 192/week @ 2024-12-06 86/week @ 2024-12-13

278 downloads per month

BSD-2-Clause

44KB
953 lines

Verify same kmer content

Verify that two files with genomic sequences (GFA or fasta) have the same kmer content.

Dependencies

~2.8–10MB
~104K SLoC