Lib.rs

› Science › Biology
#bioinformatics #min-hash #sketch #k-mer #data #sequence #genomics

sourmash

tools for comparing biological sequences with k-mer sketches

by Luiz Irber, C. Titus Brown and 39 contributors

23 releases (15 breaking)

new 0.17.2 Nov 15, 2024
0.16.0 Oct 15, 2024
0.15.0 Jul 27, 2024
0.13.1 Mar 23, 2024
0.1.1 Mar 13, 2018

#27 in Biology

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1,519 downloads per month
Used in jam-rs

BSD-3-Clause

440KB
11K SLoC

sourmash

🦀 Rust API Documentation on docs.rs build-status codecov License: 3-Clause BSD

Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.

This is the core library used by sourmash. It exposes a C API that can be called from FFI in other languages, and it is how we use it in Python for building the sourmash application (CLI and Python API).

sourmash is a product of the Lab for Data-Intensive Biology at the UC Davis School of Veterinary Medicine.

Support

Please ask questions and files issues on Github.

Development

Development happens on github at sourmash-bio/sourmash.

Minimum supported Rust version

Currently the minimum supported Rust version is 1.66.0.

Dependencies

~11–20MB
~355K SLoC