seq-here

A fast tool for bio-sequence file processing.

NOTICE : This project is still under development. The current version is 0.0.2. The usage of this tool is not recommended for production yet.

Installation

You can install seq-here using cargo:

cargo install seq-here

or you can build it from source:

git clone [TODO]
cd seq-here
cargo build --release
cp target/release/seq-here /usr/local/bin

seq-here --version

Lib Crate

You can also use seq-here as a library crate in your project, by adding the following to your Cargo.toml:

[dependencies]
seq-here = "0.0.1"

Usage

To see detailed usage information, you can run:

seq-here --help

• Info: Get basic information about the input sequence file(s).

# Fasta file information
seq-here info fa you_files.fasta,your_files2.fasta

# Fastq file information
seq-here info fq your_files.fastq

# Gff/Gtf file information, Gff2 not supported yet
seq-here info gff your_files.gff

# -o, --output: output method, default is println
# 3 options: println, file, csv

# input a directory to get all files information below the directory
seq-here info fa your_dir

• Convert: Convert or process incoming sequence file(s).

[TODO]

• Extract: Extract specified sequence segment or file data.

[TODO]

Contributing

Please read CONTRIBUTING.md for details on our code of conduct, and the process for submitting pull requests to us.

License

This project is licensed under the MIT License - see the LICENSE file for details.