5 stable releases

Uses old Rust 2015

1.0.4 May 20, 2017
1.0.2 May 18, 2017
1.0.1 Mar 23, 2017
1.0.0 Mar 21, 2017

#40 in #gpgpu

MIT license

10KB
191 lines

GPU-SW, GPGPU-enabled SW algorithm

This library provides the GPU-SW algorithm, a GPGPU-enabled classical pairwise alignment one.

Dependencies

The dependency in this project is ArrayFire (for the GPGPU). It could be thought as a wrapper of CUDA, OpenCL, and CPU multithreading, providing a unified programming interface and releasing us from optimizing for each GPU. Although it doesn't need to write kernel code, the GPGPU speed achieves to/is faster rather than one obtained by writing the native code.

Author

Heartsh

License

Copyright (c) 2017 Heartsh
Licensed under the MIT license.

Dependencies

~1.5MB
~31K SLoC