#filter #line #sam #fasta #fastq #command-line-tool #vcf

bin+lib filterx

A simple command line tool to filter data by using python-like syntax

12 releases

new 0.2.11 Nov 24, 2024
0.2.10 Nov 19, 2024
0.1.0 Oct 31, 2024

#56 in Biology

Download history 261/week @ 2024-10-27 292/week @ 2024-11-03 271/week @ 2024-11-10 314/week @ 2024-11-17

1,138 downloads per month

MIT and LGPL-3.0-only

210KB
6K SLoC

filterx

filterx logo

pypi Github Release PyPI Downloads

A fast command-line tool to filter lines by column-based expression.

Features

  • 🚀 Filter lines by column-based expression
  • 🎨 Support multiple input formats e.g. vcf/sam/fasta/fastq/gff/bed/csv/tsv
  • 🎉 Cross-platform support
  • 📦 Easy to install
  • 📚 Rich documentations

Installation

Using pip or cargo to install filterx:

pip install filterx
cargo install filterx

Download the latest release from releases.

Documentation

filterx have rich documentations, you can find them in docs.

filterx has a built-in help system, you can use filterx info --list to list all available built-in functions, and use filterx info <command> to get help for a specific function.

Star History

Star History Chart

Dependencies

~67–105MB
~2M SLoC