Lib.rs

› Science › Biology
#bam #filter #give #error #mutato #cigars #cigar

app filter_cigars

Filters reads from a BAM file that have insertions/deletions at the zero’th position, which gives errors in the variant caller mutato

by Colin Diesh

1 unstable release

0.0.1 Dec 28, 2022

#29 in #bam

MIT license

9KB
58 lines

Filter CIGARS

Removes CIGARs that mutato does not like

Install

cargo install filter_cigars

Usage

filter_cigars input.bam output.bam

Note

See https://www.biostars.org/p/9549545/ for source thread

Dependencies

~23MB
~427K SLoC