57 releases (35 stable)

new 12.2.1 Apr 16, 2025
12.2.0 Mar 6, 2025
12.0.1 Jan 30, 2025
11.1.1 Jan 21, 2025
0.1.0-alpha.6 Jul 22, 2020

#126 in Biology

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290 downloads per month
Used in 11 crates (5 directly)

BSD-2-Clause

135KB
3K SLoC

This crate abstracts over the representation of a genome string, allowing for different implementations that are catered to different use-cases.


Compact Genome

Version Downloads Docs

A Rust crate to represent a genome string in memory.

The crate defines trait abstractions over a genome string, and provides different compact implementations. At the moment, a bitpacked representation along with a basic ASCII representation of the base characters are supported.

Dependencies

~1.6–2.4MB
~52K SLoC