#file #cds #codonrs

bin+lib codonrs

Calculate relative synonymous codon usage for coding DNA sequences in a fasta file

3 unstable releases

new 0.2.3 Mar 30, 2025
0.2.2 Mar 30, 2025
0.2.1 Mar 27, 2025
0.2.0 Mar 26, 2025
0.1.0 Mar 24, 2025

#191 in Biology

Download history 296/week @ 2025-03-23

296 downloads per month

GPL-3.0 license

32KB
389 lines

codonrs v0.2.1

Calculate relative synonymous codon usage (RSCU) for coding DNA sequences (CDS)

Usage

codonrs [Optional: -t <translation table>] -i <input.fasta> -o <prefix for output CSV files>

Dependencies

~18–32MB
~425K SLoC