#file #codonrs #codon

bin+lib codonrs

Calculate relative synonymous codon usage for coding DNA sequences in a fasta file

4 releases

0.2.4 Apr 3, 2025
0.2.3 Mar 30, 2025
0.1.0 Mar 24, 2025

#160 in Biology

Download history 308/week @ 2025-03-24 234/week @ 2025-03-31 27/week @ 2025-04-07

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GPL-3.0 license

32KB
413 lines

codonrs

Calculate relative synonymous codon usage (RSCU) for coding DNA sequences (CDS).

Usage

codonrs [Optional: -t <translation table>] -i <input.fasta> -o <prefix for output CSV files>

  • <translation table> - (Optional) an integer representing the translation table to use, following NCBI numbering. Defaults to 1.
  • input.fasta - a multi fasta file containing DNA sequences to be analysed.

Dependencies

~20–30MB
~446K SLoC